2015 C. gigas oysterseed DIA update

Today I worked on the DIA protocol and now have an exported report that I think I can start using with MS Stats. Still waiting on some input from Emma, but details are below:

DIA Protocol

I split the protocol into two parts, so far:

They are still works in progress, and I’ll add more details to them later.

What I have to show:

Next steps:

Use Yaamini’s notebook as a guide for using MSStats to analyze the SkylineDaily report .csv.

However, I still need to hear back from Emma, so I’ll hold off on the MSStats until she has time to take a look at the report .csv.

Written on December 10, 2018