See post for details!

First Paper!

I have a final draft ready! I am doing some final fine-tune edits, and will be submitting it the journal special issue this week!

Multi-species work

The repository will be kept private, but I’ll share some general goals and updates in my notebook!

This week:

• compile all files needed for analyses into GitHub repository
• trim RNAseq data for all three species
• index genomes
• get count matrices for all three species

Rest of month

• figure out how to compare the three species (can’t do DESeq2 for each species because didn’t get RNAseq from controls…) - will discuss this week in lab meeting to get some ideas
• carry-out analyses

Eelgrass work this spring and summer

• Figure out with Eric from FHL what permitting is required to work with bacteria in the FHL OA lab - more details on this project in the coming months
• Plan out experimental treatments

Other

Write up some summary posts from what I’ve done the past 1.5-ish months!!

And keep up on notebook posts this month!