Post linking to GOSlim tables from the orthogroups for each species, shared for all three species, and shared between two species.

R code to find lists of orthologs that are unique, shared with all three, and shared amongst two species: project-pycno-multispecies-2023/code/24-degs-orthologs.Rmd

Output folder for the above code: project-pycno-multispecies-2023/output/24-degs-orthologs. Also the DEGlists of different ortholog groupings for the GOSlim tables are listed below.

R code: project-pycno-multispecies-2023/code/25-degs-orth-GOSlim.Rmd

Results:

Pycnopodia helianthoides:

  1. Pycno GOSlim table from DEGs from Day 12 from unique-to-pycno orthogroups: /output/25-degs-orth-GOSlim/GOSlim-DEGlist_pycnoDay12_all_unique_orthogroups.tab
  2. Pycno GOSlim table from DEGs from Day 12 from orthogroups shared amongst all three species: /25-degs-orth-GOSlim/GOSlim-DEGlist_pycnoDay12_all_species_shared_orthogroups.tab
  3. Pycno GOSlim table from DEGs from Day 12 from othogroups shared with Pisaster: /25-degs-orth-GOSlim/GOSlim-DEGlist_pycnoDay12_shared_orthogroups_with_pisaster.tab
  4. Pycno GOSlim table from DEGs from Day 12 from orthogroups shared with Dermasterias: /25-degs-orth-GOSlim/GOSlim-DEGlist_pycnoDay12_shared_orthogroups_with_derm.tab

Pisaster ochraceus:

  1. Pisaster GOSlim table from DEGs from Day 12 from unique-to-pisaster orthogroups: /25-degs-orth-GOSlim/GOSlim-DEGlist_pisasterDay12_all_unique_orthogroups.tab
  2. Pisaster GOSlim table from DEGs from Day 12 from orthogroups shared amongst all three species: /25-degs-orth-GOSlim/GOSlim-DEGlist_pisasterDay12_all_species_shared_orthogroups.tab
  3. Pisaster GOSlim table from DEGs from Day 12 from othogroups shared with Pycno: /25-degs-orth-GOSlim/GOSlim-DEGlist_pisasterDay12_shared_orthogroups_with_pycno.tab
  4. Pisaster GOSlim table from DEGs from Day 12 from orthogroups shared with Dermasterias: /25-degs-orth-GOSlim/GOSlim-DEGlist_pisasterDay12_shared_orthogroups_with_derm.tab

Dermasterias imbricata:

  1. Dermasterias GOSlim table from DEGs from Day 12 from unique-to-dermasterias orthogroups: /25-degs-orth-GOSlim/GOSlim-DEGlist_dermDay12_all_unique_orthogroups.tab
  2. Dermasterias GOSlim table from DEGs from Day 12 from orthogroups shared amongst all three species: /25-degs-orth-GOSlim/GOSlim-DEGlist_dermDay12_all_species_shared_orthogroups.tab
  3. Dermasterias GOSlim table from DEGs from Day 12 from othogroups shared with Pycno: /25-degs-orth-GOSlim/GOSlim-DEGlist_dermDay12_shared_orthogroups_with_pycno.tab
  4. Dermasterias GOSlim table from DEGs from Day 12 from orthogroups shared with Pisaster: /25-degs-orth-GOSlim/GOSlim-DEGlist_dermDay12_shared_orthogroups_with_pisaster.tab