Check out post for alignment updates on the multispecies data!

This analysis is building off of pre-analysis work, post: Feb 19, 2025: MultiSpecies - MultiQC, Trimming, Short-term Goals.

REMINDER: This GitHub repository for this project is private, so the links will only work for those with access to the GitHub Repository.

Aligning P. helianthoides

Doing this work on RAVEN.

12-hisat2_pycno.Rmd

The library IDs that are from P. helianthoides for this time point are:
| Library_ID | Bin_Number | |————|————| | 519 | 1 | | 525 | 2 | | 531 | 3 | | 537 | 4 | | 549 | 6 | | 561 | 8 |

Alignment MultiQC report: pycno_2023_alignment_multiqc_report.html

Gene count matrix: project-pycno-multispecies-2023/data/pycno_gene_count_matrix_2023.csv
Transcript count matrix: project-pycno-multispecies-2023/data/pycno_transcript_count_matrix_2023.csv

Completed 2025-02-24.

Aligning P. ochraceus

Doing this work on RAVEN.

13-hisat2_pisaster.Rmd

The library IDs that are from P. ochraceus for this time point are:
| Library_ID | Bin_Number | |————|————| | 518 | 1 | | 524 | 2 | | 530 | 3 | | 536 | 4 | | 548 | 6 | | 560 | 8 |

Alignment MultiQC report: pisaster_2023_alignment_multiqc_report.html

Gene count matrix: project-pycno-multispecies-2023//data/pisaster_gene_count_matrix_2023.csv
Transcript count matrix: project-pycno-multispecies-2023//data/pisaster_transcript_count_matrix_2023.csv

Completed 2025-02-24.

Up Next:

Aligning D. imbricata
Doing this work on RAVEN.

The library IDs that are from D. imbracata for this time point are:
| Library_ID | Bin_Number | |————|————| | 517 | 1 | | 523 | 2 | | 529 | 3 | | 535 | 4 | | 547 | 6 | | 559 | 8 |