Updates on Summer 2022 data entry and Summer 2021/2022 analyses - see post for details.

Summer 2022 Data Entry

I entered one star’s worth of data. I have three more stars to do - will be finishing them THIS WEEK!

Summer 2021 and 2022 Analyses

R code for alignements: paper-pycno-sswd-2021-2022/code/20-hisat2-genecount-matrices.Rmd

The alignments for 2021 have completed… and I was going to move on to the next step of converted the .sam files to .bam files… but I decided to first pull from Github while working in Raven…. and got an error.

I don’t really understand what it means. here’s the GitHub Issue where Steven and Sam have been helping me: Issue 1968

I won’t be continuing the analyses until I figure this out because I don’t want to lose anything or mess anything up. Also, I can’t commit and push any changes anyway until the issue is resolved.

UPDATE: Issue resolved. The HDD is full… so I deleted a BUNCH OF HUGE UNNECESSARY FILES! And now there’s space.

So now I’m coverting the .sam files to .bam files.

Meetings

I had two meetings this afternoon with different factions of the sea star team to go over progress and goals.