Today I read a lot about crustacean immune systems and macropinocytosis. Notes in my crab paper. Additionally, SR and I met and chatted about short-term plan. I annotated the 2019 infection status DEG list. Details in post
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Made new crab transcriptome stress response gene list; notes on crab immunity and macropinocytosis
Today I made a new crab stress response table with more information. I also started an outline for the intro based on the meeting I had with Steven yesterday. I’ve been reading/finding resources about crab/crustacean immunity and macropinocytosis. Will add more to intro and discussion as I learn more.
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Crab Results progress - GOslim transcriptome plot, macropinocytosis list and notes
Crab transcriptome GOslim
Got the BLAST output from the crab transcriptome to GO slim terms using 042320-bairdi_transcriptome-BLAST-to-GOslim.ipynb
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Tried some more GO-MWU stuff - not great - switching gears
Today I tried some more GO-MWU stuff, but it didn’t really do much. After input at lab meeting, I tried using DAVID first, then GO-MWU… got 1 enriched biological process. Meeting with Steven –> new plan of things to focus on for now (writing, results we have). Details in post....
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Trying GO-MWU with 2019 crab data
In this post I’ll detail what I’ve been trying in GO-MWU with the 2019 crab dataset, comparing infected and uninfected crabs. The post will detail progress from most recent attempt to frist attempts.
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