Sam extracted RNA using the Quick DNA/RNA Microprep Plus Kit (ZymoResearch) (post). I don’t think there is currently enough RNA in the libraries to reach the requiremets for NWGC… details in post.
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May Goals
Crab Project
Help with getting pooled samples submitted for library prep and sequencing to the NWGC
Think of what crab-related data that I have can be used for FISH 497 course
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More tables for 2015 _C. gigas_ seed
Today I spoke with Steven about what the results are for the 2015 C. gigas seed paper. I made a new annotated table for the 69 differentially abundant (though not significantly) proteins. Edits to paper.
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Bairdi RNA extractions- other methods to try; Plan for Week
Between trying to add some edits and clean things up for the 2015 Oysterseed project paper, I’ve been reading protocols for other RNA extraction kits. Zymo Quick-DNA/RNA Mircoprep Plus Kit, Zymo Directzol RNA MiniPrep… Details in post
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Annotated Protein List from MS Stats with set thresholds... in progress
Yesterday and today I got some more 2015 DIA paper-related tasks done, including making a table that includes the proteins detected above a log2FC of 3.00 and below -3.00, and one that was annotated…
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