Create list of Trinity_IDs associated with GOslim "Stress response" from annotated crab transcriptome
Today I made a list of Trinity_IDs that are associated with the GOslim term “stress response” from the annotated crab transcriptome. I also clean up a few things in the project-crab/analyses repo… kind of.
Used this Rmd: 042720-get_crab-stress_response-genelist.Rmd
“stress response” Trinity ID list: crab_stress-response-genes.tab
Not sure if I should
join the above list with other information to make it more useful. Will ask in lab meeting tomorrow.
cleaning up a
project-crab repo a little:
Move some files around, made a new directory in
BLAST files: analyses/BLAST_to_GOslim
other crab project related things:
- still looking up more about macropinocytosis and what it could mean that it’s enriched in infected crabs
- editing and adding more to the crab paper