Lab Notebook

This post details what’s been going on with the crab paper. The paper is almost done!!! [Read More]

I made some progress in getting new results for the crab part of my thesis. I ran DESeq2 on libraries 8-11 based on infection, but taking temperature into account. I then took those results and contrasted the two temperature treatments to get an effect of temperature on infection gene expression.... [Read More]

Writing this halfway through the month of June, but it’s ok. [Read More]

Today I did another DESeq2 analysis comparing crabs A, B, C to crabs G, H, I at Day 2 in order to get any DEGs for temperature on infection. I also tried making some more heatmaps, and I think there may be some cool ones… [Read More]

Today I’ve been playing with heatmaps and have been able to make quite a few. Now, I’m just going to keep making a bunch from the individual crab RNAseq data to see if there are any interesting patterns. However, I am struggling to get the Trinity ID counts from the... [Read More]