In this post I’ll detail what I’ve been trying in GO-MWU with the 2019 crab dataset, comparing infected and uninfected crabs. The post will detail progress from most recent attempt to frist attempts.
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edgeR practice: crab 2019 data
Haven’t posted in a long long time… so in today’s post I’ll detail what I’ve been up to with the crab project: paper progress and trying out edgeR for differential gene expression analyses.
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March 2020 Goals
Crab Work on new results to share at NSA (my talk is March 30th 3:45pm EST) Start manuscript for real! Friday morning lab writing blocks for Pubathon “The Panic Edition” will help! Analyses After all my TA duties are done (will be done by March 20th!!) start helping with qPCR,...
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Create list of Trinity_IDs associated with GOslim "Stress response" from annotated crab transcriptome
Today I made a list of Trinity_IDs that are associated with the GOslim term “stress response” from the annotated crab transcriptome. I also clean up a few things in the project-crab/analyses repo… kind of.
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Sent samples to Genewiz
Today I shipped samples to Genewiz for individual RNAseq. Details in post.
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