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Sent BLAST to Mox, and Plan for rest of Week

I sent a .sh to Mox to perform a BLAST with my assembled C. bairdi transcriptome and swiss prot. I am also working on figuring out how to do this on Hummingbird (on toaster/grace). Additionally, I have come up with a list of things I want to accomplish this week!... [Read More]
Tags: BLAST Mox bairdi

November Goals

Crab Project RNA extractions and Libraries (Get this done before I go home Dec 21st) Come up with RNA extraction plan for the remaining libraries Perform extractions using Qiagen RNeasy Plus Micro Kit Data organization Create new R scripts for adding new Qubit results data to a master file combining... [Read More]

Re-run Trinity with correct files

Today I re-ran Trinity because the original files I used that I downloaded to my computer from nightingales were too small and not .fastq.gz. Sam showed me how to do rsync from nightingales to mox. I also am working on doing a BLAST with the finished Trinity.fasta that is too... [Read More]