Worked a lot on the crab paper intro and bits of results and discussion here and there. I also made an annotated BLAST output from the crab transcriptome with the uniprot-SP-GO.sorted file.
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April 2020 Goals
Crab
finish paper
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Annotate 2019 infection status DEG list; short-term paper plan
Today I read a lot about crustacean immune systems and macropinocytosis. Notes in my crab paper. Additionally, SR and I met and chatted about short-term plan. I annotated the 2019 infection status DEG list. Details in post
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Made new crab transcriptome stress response gene list; notes on crab immunity and macropinocytosis
Today I made a new crab stress response table with more information. I also started an outline for the intro based on the meeting I had with Steven yesterday. I’ve been reading/finding resources about crab/crustacean immunity and macropinocytosis. Will add more to intro and discussion as I learn more.
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Crab Results progress - GOslim transcriptome plot, macropinocytosis list and notes
Crab transcriptome GOslim
Got the BLAST output from the crab transcriptome to GO slim terms using 042320-bairdi_transcriptome-BLAST-to-GOslim.ipynb
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